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Bioinformatics & Biostatistics Publications

2008
Bandyopadhyay D, Datta S. A novel approach to testing equality of survival distributions when the population marks are missing. Journal of Statistical Planning and Inference. 2008;138:1722-1732.

Bhattacharjee S, Kuo CL, Mukhopadhyay N, Brock GN, Weeks DE, Feingold E. Robust score statistics for Quantitative Trait Locus [QTL] linkage analysis. American Journal of Human Genetics. 2008;82:567-582.

Bordon J, Peyrani P, Brock GN et al. The presence of pneumococcal bacteremia does not influence clinical outcomes in patients with community-acquired pneumonia: results from the Community-Acquired Pneumonia Organization (CAPO) International Cohort study. Chest. 2008;133:618-624.

Brock G, Pihur V, Datta S, Datta S. clValid: An R Package for Cluster Validation. Journal of Statistical Software. 2008;25.

Brock GN, Shaffer JR, Blakesley RE, Lotz MJ, Tseng GC. Which missing value imputation method to use in expression profiles: a comparative study and two selection schemes. BMC Bioinformatics. 2008;9:12.

Brown HS, III, Perez A, Mirchandani GG, Hoelscher DM, Kelder SH. Crime rates and sedentary behavior among 4th grade Texas school children. The International Journal of Behavioral Nutrition and Physical Activity. 2008;5.

Buell JF, Thomas MT, Rudich S, Brock G et al. Experience with more than 500 minimally invasive hepatic procedures. Annals of Surgery. 2008;248:475-486.

Buell JF, Brock GN. Risk of cancer in liver transplant recipients: A look into the mirror. Liver Transplantation. 2008;14:1561-1563.

Datta S, Datta S, Pihur V. Finding common genes in multiple cancer types through meta-analysis of microarray experiments: a rank aggregation approach. Genomics. 2008;92:400-403.

Datta S, Satten GA. A signed-rank test for clustered data. Biometrics. 2008;64:501-507.

Datta S, Turner D, Singh R, Ruest LB, Pierce WM, Jr., Knudsen TB. Fetal alcohol syndrome (FAS) in C57BL/6 mice detected through proteomics screening of the amniotic fluid. Birth Defects Research. 2008;82:177-186.

Datta S. Classification of breast cancer versus normal samples from mass spectrometry profiles using linear discriminant analysis of important features selected by random forest. Statistical Applications in Genetics & Molecular Biology. 2008;7:Article7.

Datta S, Datta S, Pihur V. Reconstruction of genetic association networks from microarray data: a partial least squares approach. Bioinformatics. 2008;24:561-568.

Datta S, Datta S, Parrish RS, Thompson CM. Microarray data analysis. In: Khatree R, Naik D, eds. Computational Methods in Biomedical Research. Chapman & Hall/CRC Biostatistics Series; 2008:1-43.

Kong M, Lee JJ. A semiparametric response surface model for assessing drug interaction. Biometrics. 2008;64:396-405.

Landry CS, Brock G, Scoggins CR, McMasters KM, Martin RC. Proposed staging system for colon carcinoid tumors based on an analysis of 2,459 patients. Journal of the American College of Surgeons. 2008;207:874-881.

Landry CS, Brock G, Scoggins CR, McMasters KM, Martin RC. A proposed staging system for small bowel carcinoid tumors based on an analysis of 6,380 patients. American Journal of Surgery. 2008;196:896-903.

Landry CS, Brock G, Scoggins CR, McMasters KM, Martin RC. A proposed staging system for rectal carcinoid tumors based on an analysis of 4701 patients. Surgery. 2008;144:460-466.

Myers J, Subczyk W, Ketterman K, Carrico R. Health promotion schools of excellence: learning from the past to impact the future. Journal of the Kentucky Medical Association. 2008;106:98-103.

Rai SN, Hudson MM, McCammon E et al. Implementing an intervention to improve bone mineral density insurvivors of childhood acute lymphoblastic leukemia: BONEII, a prospective placebo-controlled double-blind randomized interventional longitudinal study design. Contemporary Clinical Trials. 2008;29:711-719.

Ruble L, McDuffie A, King AS, Lorenz D. Caregiver Responsiveness and Social Interaction Behaviors of Young Children With Autism. Topics in Early Childhood Special Education. 2008;28:158-170.

Salvador C, Li B, Hansen R, Cramer DE, Kong M, Yan J. Yeast-derived beta-glucan augments the therapeutic efficacy mediated by anti-vascular endothelial growth factor monoclonal antibody in human carcinoma xenograft models. Clinical Cancer Research. 2008;14:1239-1247.

Shi SQ, Wu D. Modeling moisture absorption process of wood-based composites under over-saturated moisture conditions using two-part equations. Wood Science and Technology. 2008;43:143-152.

Warkentine FH, Clyde PM, Lorenz D, Kim IK. The anatomic relationship of femoral vein to femoral artery in euvolemic pediatric patients by ultrasonography: implications for pediatric femoral central venous access. Academic Emergency Medicine. 2008;15:426-430.

Wu D, Rosner GL. Estimating Benefits Due to Fecal Occult Blood Test for Colorectal Cancer. Cancer Causes and Control/Springer. 2008.

Yoo JK. Sufficient dimension reduction for the conditional mean with a categorical predictor in multivariate regression. Journal of Multivariate Analysis. 2008;99:1825-1839.

Yoo JK, Cook RD. Response dimension reduction for the conditional mean in multivariate regression. Computational Statistics and Data Analysis. 2008;53:334-343.

2007
Atroshi I, Gummesson C, McCabe SJ, Ornstein E. The SF-6D health utility index in carpal tunnel syndrome. J. 2007;32:198-202.

Boratyn GM, Datta S, Datta S. Incorporation of biological knowledge into distance for clustering genes. Bioinformation. 2007;1:396-405.

Borell M, Myers J, Rineair S. Preventing RSV in pediatric patients: improving the outcome at home. Caring. 2007;26:34-37.

Brock GN, Weeks DE, Sobel E, Feingold E. A hierarchical model for estimating significance levels of non-parametric linkage statistics for large pedigrees. Genetic Epidemiology. 2007;31:417-430.

Cambon AC, Khalyfa A, Cooper NG, Thompson CM. Analysis of probe level patterns in Affymetrix microarray data. BMC Bioinformatics. 2007;8:146.

Datta S, Le-Rademacher J, Datta S. Predicting patient survival from microarray data by accelerated failure time modeling using partial least squares and LASSO. Biometrics. 2007;63:259-271.

Ginsberg JP, Rai SN, Carlson CA et al. A comparative analysis of functional outcomes in adolescents and young adults with lower-extremity bone sarcoma. Pediatric Blood & Cancer. 2007;49:964-969.

Helm CW, Lorenz DJ, Meyer NJ, Rising WR, Wulff JL. Retinoids for preventing the progression of cervical intra-epithelial neoplasia. Cochrane Database Syst Rev. 2007;CD003296.

Hinds PS, Hockenberry M, Tong X et al. Validity and reliability of a new instrument to measure cancer-related fatigue in adolescents. Journal of Pain & Symptom Management. 2007;34:607-618.

Johnson SB, Datta S, Hornung CA, Casanova MF. Mathematical models of epigenetic influences in Autism: a new perspective based on neuropathological findings. In: Paul C.Carlisle, ed. Progress in Autism Research. New York, New York: Nova Science Publishers, Inc.; 2007:101-14.

Kalbfleisch T, Cambon A, Wattenberg BW. A bioinformatics approach to identifying tail-anchored proteins in the human genome. Traffic. 2007;8:1687-1694.

Koller DM, Myers AB, Lorenz D, Godambe SA. Effectiveness of oxycodone, ibuprofen, or the combination in the initial management of orthopedic injury-related pain in children. Pediatr Emerg Care. 2007;23:627-633.

Lee JJ, Kong M, Ayers GD, Lotan R. Interaction index and different methods for determining drug interaction in combination therapy. J Biopharm Stat. 2007;17:461-480.

McCabe SJ, Uebele A, Pihur V, Rosales T, Atroshi I. A Comparison of the epidemiologic associations of carpal tunnel syndrome and sleep position: Is there a case for causation? Hand. 2007;2:127-134.

Myers J, McCabe S, Gohmann S. Quality-of-life assessment when there is a loss of income. Med Decis Making. 2007;27:27-33.

Myers J. Survival analysis techniques in clinical research. J Ky Med Assoc. 2007;105:545-550.

Pihur V, Datta S, Datta S. Weighted rank aggregation of cluster validation measures: a Monte Carlo cross-entropy approach. Bioinformatics. 2007;23:1607-1615.

Pihur V, Datta S, Datta S. Finding cancer genes through meta-analysis of microarray experiments: Rank aggregation via the cross entropy algorithm. CAMDA 2007. 2007;abridged version.

Pihur V, Datta S, Datta S. Understanding Chronic Fatigue Syndrome (CFS) from CAMDA data: A systems biology approach. CAMDA 2007. 2007.

Tyler LN, Andrews N, Parrish RS, Hazlett LJ, Korourian S. Significance of margin and extent of dysplasia in loop electrosurgery excision procedure biopsies performed for high-grade squamous intraepithelial lesion in predicting persistent disease. Arch Pathol Lab Med. 2007;131:622-624.

Workman GM, Ribeiro RC, Rai SN et al. Pediatric cancer knowledge: assessment of knowledge of warning signs and symptoms for pediatric cancer among Brazilian community health workers. Journal of Cancer Education. 2007;22:181-185.

Wu D, Rosner GL, Broemeling LD. Bayesian inference for the lead time in periodic cancer screening. Biometrics. 2007;63:873-880.

Xu P, Lang L, McCabe SJ. Modeling the Management of a Flexor Sheath Ganglion. Hand. 2007;2:222-226.

Yoo JK, Cook RD. Sufficient dimension reduction for the conditonal mean in multivariate regression. Biometrika. 2007;94:231-242.

Zheng H, Basawa IV, Datta S. First order random coefficient autoregressive processes. Journal of Statistical Planning and Inference. 7 A.D.;137:212-229.

2006
Boratyn GM, Datta S, Datta S. Biologically Supervised Hierarchical Clustering Algorithms for Gene Expression Data. Engineering in Medicine and Biology Society, 2006. EMBS '06. 28th Annual International Conference of the IEEE.New York: IEEE; 2006. p. 5515-8.

Cloud RN, Besel K, Bledsoe L et al. Adapting Motivational Interviewing Strategies to Increase Posttreatment 12-Step Meeting Attendance. Alcoholism Treatment Quarterly 2006;24(3):31-53.

Datta S, Datta S. Evaluation of clustering algorithms for gene expression data. BMC Bioinformatics 2006;7 Suppl 4:S17.

Datta S, DePadilla LM. Feature selection and machine learning with mass spectrometry data for distinguishing cancer and non-cancer samples. Statistical Methodology 2006 January;3(1):79-92.

Datta S, Datta S. Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes. BMC Bioinformatics 2006;7:397.

Datta S, Sundaram R. Nonparametric estimation of stage occupation probabilities in a multistage model with current status data. Biometrics 2006 September;62(3):829-37.

Datta S, Datta S. Validation Measures for Clustering Algorithms Incorporating Biological Information. First International Multi-Symposiums on Computer and Computational Sciences 2006;1:131-5.

Grady JA, Bumpous JM, Fleming MM et al. Advantages of a targeted approach in minimally invasive radioguided parathyroidectomy surgery for primary hyperparathyroidism. Laryngoscope 2006 March;116(3):431-5.

Hoffman JS, Cunningham DR, Lorenz DJ. Auditory thresholds and factors contributing to hearing loss in a large sample of percussionists. Medical Problems of Performing Artists 2006 June;21(2):47-58.

Kong M, Lee JJ. A generalized response surface model with varying relative potency for assessing drug interaction. Biometrics 2006 December;62(4):986-95.

Kong M, Eubank R. Monotone smoothing with application to dose-response curves. Communication in Statistics: Computation and Simulation 2006;35(4):991-1004.

Levine RL, Kives S, Cathey G et al. The use of lightly embalmed (fresh tissue) cadavers for resident laparoscopic training. Journal of Minimally Invasive Gynecology 2006 September;13(5):451-6.

Myers J, McCabe S, Gohmann S. Economic analysis in hand surgery. Journal of Hand Surgery - American Volume 2006 April;31(4):664-8.

Ozyurekoglu T, McCabe SJ, Goldsmith LJ, LaJoie AS. The minimal clinically important difference of the Carpal Tunnel Syndrome Symptom Severity Scale. Journal of Hand Surgery - American Volume 2006 May;31(5):733-8.

Stetson BA, Carrico AR, Beacham AO, Ziegler CH, Mokshagundam SP. Feasibility of a pilot intervention targeting self-care behaviors in adults with diabetes mellitus. Journal of Clinical Psychology in Medical Settings 2006 September;13(3):239-49.

Sunil TM, Wolff TW, Scheker LR, McCabe SJ, Gupta A. A comparative study of ulnar-shortening osteotomy by the freehand technique versus the Rayhack technique. Journal of Hand Surgery - American Volume 2006 February;31(2):252-7.

Zheng H, Basawa IV, Datta S. Inference for pth-Order Random Coefficient Integer-Valued Autoregressive Processes. Journal of Time Series Analysis 2006 May;27(3):411-40.

2005
Brock GN, Maher BS, Goldstein TH, Cooper ME, Marazita ML. Methods for detecting gene x gene interaction in multiplex extended pedigrees. BMC genetics 2005 December 30;6(Suppl 1):S144.

Culligan PJ, Blackwell L, Goldsmith LJ, Graham CA, Rogers A, Heit MH. A randomized controlled trial comparing fascia lata and synthetic mesh for sacral colpopexy. Obstetrics & Gynecology 2005 July;106(1):29-37.

Culligan PJ, Blackwell L, Murphy M, Ziegler C, Heit MH. A randomized, double-blinded, sham-controlled trial of postpartum extracorporeal magnetic innervation to restore pelvic muscle strength in primiparous patients. American Journal of Obstetrics & Gynecology 2005 May;192(5):1578-82.

Culligan PJ, Myers JA, Goldberg RP, Blackwell L, Gohmann SF, Abell TD. Elective cesarean section to prevent anal incontinence and brachial plexus injuries associated with macrosomia--a decision analysis. International Urogynecology Journal 2005 January;16(1):19-28.

Datta S, Satten GA. Rank-Sum Tests for Clustered Data. Journal of the American Statistical Association 2005 September;100(471):908-15.

Edds AC, Walden JE, Scheetz JP, Goldsmith LJ, Drisko CL, Eleazer PD. Pilot study of correlation of pulp stones with cardiovascular disease. Journal of Endodontics 2005 July;31(7):504-6.

Godleski LS, Goldsmith LJ, Vieweg WV, Zettwoch N, Stikovac D, Lewis S. Switching depot antipsychotic drug responders to oral olanzapine. Progress in Neuro-Psychopharmacology & Biological Psychiatry 2005 January;29(1):141-4.

Jarrett PG, Deschenes PJ, MacDonald EA, Thompson C. Pharmacy review rounds and medication appropriateness on a GEMU. Geriatrics Today: Journal of the Canadian Geriatrics Society 2005;8(1):21-6.

Kiat-Amnuay S, Gettleman L, Mekayarajjananonth T, Khan Z, Goldsmith LJ. The influence of water storage on durometer hardness of 5 soft denture liners over time. Journal of Prosthodontics 2005 March;14(1):19-24.

LaJoie AS, McCabe SJ, Thomas B, Edgell SE. Determining the sensitivity and specificity of common diagnostic tests for carpal tunnel syndrome using latent class analysis. Plastic & Reconstructive Surgery 2005 August;116(2):502-7.

Logsdon MC, Hutti MH, Ziegler CH. Patient satisfaction: A critical outcome to document the contributions of WHNP's to the practice setting. Women's Health Care: A Practical Journal for Nurse Practitioners 2005 April;2(4):25-9.

Maher BS, Brock GN. Approaches to detecting gene x gene interaction in Genetic Analysis Workshop 14 pedigrees. Genetic Epidemiology 2005;29 Suppl 1:S116-S119.

Myers J, McCabe SJ. Understanding medical decision making in hand surgery. Clinics in Plastic Surgery 2005 October 20;32(4):453-61.

Parrish RS, Delongchamp RR. Normalization of Microarray Data. In: Allison DB, Page GP, Beasley TM, Edwards JW, editors. DNA Microarrays and Related Genomics Techniques: Design, Analysis, and Interpretation of Experiments. Chapman & Hall/CRC; 2005.

Preminger JE, Carpenter R, Ziegler CH. A clinical perspective on cochlear dead regions: intelligibility of speech and subjective hearing aid benefit. Journal of the American Academy of Audiology 2005 September;16(8):600-13.

Raj AB, Condurache T, Bertolone S, Williams D, Lorenz D, Sobczyk W. Quantitative assessment of ventricular function in sickle cell disease: effect of long-term erythrocytapheresis. Pediatric Blood & Cancer 2005 December;45(7):976-81.

Stetson BA, Beacham AO, Frommelt SJ et al. Exercise slips in high-risk situations and activity patterns in long-term exercisers: an application of the relapse prevention model. Annals of Behavioral Medicine 2005 August;30(1):25-35.

Wright JH, Wright AS, Albano AM et al. Computer-assisted cognitive therapy for depression: maintaining efficacy while reducing therapist time. American Journal of Psychiatry 2005 June;162(6):1158-64.

Zakharkin SO, Kim K, Mehta T et al. Sources of variation in Affymetrix microarray experiments. BMC Bioinformatics 2005 August 29;6:214.

Zambroski CH, Moser DK, Bhat G, Ziegler C. Impact of symptom prevalence and symptom burden on quality of life in patients with heart failure. European Journal of Cardiovascular Nursing 2005 September;4(3):198-206.

2004
Bass PF, Stetson BA, Rising W, Wesley GC, Ritchie CS. Development and Evaluation of a Nutrition and Physical Activity Counseling Module for First-Year Medical Students. Medical Education Online 9, 9-23. 2004. Ref Type: Serial (Book,Monograph)

Cloud RN, Ziegler CH, Blondell RD. What is Alcoholics Anonymous affiliation? Substance Use & Misuse 2004 June;39(7):1117-36.

Kiat-Amnuay S, Gettleman L, Goldsmith LJ. Effect of multi-adhesive layering on retention of extraoral maxillofacial silicone prostheses in vivo. Journal of Prosthetic Dentistry 2004 September;92(3):294-8.

Kyasa MJ, Hazlett L, Parrish RS, Schichman SA, Zent CS. Veterans with chronic lymphocytic leukemia/small lymphocytic lymphoma (CLL/SLL) have a markedly increased rate of second malignancy, which is the most common cause of death. Leukemia & Lymphoma 2004 March;45(3):507-13.

Morpurgo E, Vitale GC, Galandiuk S, Kimberling J, Ziegler C, Polk HC, Jr. Clinical characteristics of familial adenomatous polyposis and management of duodenal adenomas. Journal of Gastrointestinal Surgery 2004 July;8(5):559-64.

Mukhopadhyay P, Greene RM, Zacharias W et al. Developmental gene expression profiling of mammalian, fetal orofacial tissue. Birth Defects Research 2004 December;70(12):912-26.

Parrish RS, Spencer HJ, III. Effect of normalization on significance testing for oligonucleotide microarrays. Journal of Biopharmaceutical Statistics 2004 August;14(3):575-89.

Weinrich MC, Weinrich SP, Weissbecker I, Mayberry-Brent K, Seger RE. Recruitment incentives to reduce disparities among medically underserved men. American Journal of Health Studies 2004;19(1):45-53.

Weinrich SP, Hudson PJ, Moyad MA, Weinrich MC. Intake of selected nutritional supplements by African-American men. Urology 2004 December;64(6):1094-7.

Weinrich SP, Seger R, Miller BL et al. Knowledge of the limitations associated with prostate cancer screening among low-income men. Cancer Nursing 2004 November;27(6):442-53.

2003
Bowden CL, Calabrese JR, Sachs G et al. A placebo-controlled 18-month trial of lamotrigine and lithium maintenance treatment in recently manic or hypomanic patients with bipolar I disorder. Archives of General Psychiatry 2003 April;60(4):392-400.

Derr J, Goldsmith LJ. How to Report Nonsignificant Results: Planning to Make the Best Use of Statistical Power Calculations. Journal of Orthopaedic & Sports Physical Therapy 2003 June;33(6):303-6.

Derr J, Goldsmith LJ. How to Report Nonsignificant Results: Frequently Asked Questions. Journal of Orthopaedic & Sports Physical Therapy 2003 July;33(7):367-8.

Fleming DR, Ziegler C, Baize T, Mudd L, Goldsmith GH, Herzig RH. Cefepime versus ticarcillin and clavulanate potassium and aztreonam for febrile neutropenia therapy in high-dose chemotherapy patients. American Journal of Clinical Oncology 2003 June;26(3):285-8.

Godleski LS, Goldsmith LJ, Vieweg WV, Zettwoch NC, Stikovac DM, Lewis SJ. Switching from depot antipsychotic drugs to olanzapine in patients with chronic schizophrenia. Journal of Clinical Psychiatry 2003 February;64(2):119-22.

McClave SA, Lowen CC, Kleber MJ, McConnell JW, Jung LY, Goldsmith LJ. Clinical use of the respiratory quotient obtained from indirect calorimetry. Jpen: Journal of Parenteral & Enteral Nutrition 2003 January;27(1):21-6.

Morpurgo E, Petras R, Kimberling J, Ziegler C, Galandiuk S. Characterization and clinical behavior of Crohn's disease initially presenting predominantly as colitis. Diseases of the Colon & Rectum 2003 July;46(7):918-24.

Weinrich SP, Iyun BF, Shittu O, Weinrich MC, Doll MA, Hein DW. Prostate cancer in Nigerian men: glutathione S-transferase case-control pilot study. Austral-Asian Journal of Cancer 2003 October;2(3):191-7.

Weinrich SP, Weinrich MC, Hudson J, Fodi C. Self-reported reasons African-American and low-income men decide not to participate in free prostate cancer screening. Oncology Nursing Forum 2003 January;30(1):E12-E16.

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