Recent Publications

Peer-reviewed publications and book/chapters


"Analysis of equine protein-coding gene structure and expression by RNA-sequencing" Coleman S Zeng Z Liu J Macleod IN. BMC Bioinformatics 2010 11(SuppI4):08 July 2010.
Books Reference
Journals Reference
PMID: 25554683;
Kelley RR, Mattingly WA, Wiemken TL, Khan M, Coats D, et al. Visual grids for managing data completeness in clinical research datasets. J Biomed Inform. 2014 Dec 30;[Epub ahead of print]
PMID: 19638302;
PMCID: PMC2774823.
Whitaker CM, Cooper NG. The novel distribution of phosphodiesterase-4 subtypes within the rat retina. Neuroscience. 2009 Nov 10;163(4):1277-91.
PMID: 22724427;
PMCID: PMC3459310.
Marczinski CA, Fillmore MT, Henges AL, Ramsey MA, Young CR. Mixing an energy drink with an alcoholic beverage increases motivation for more alcohol in college students. Alcohol Clin Exp Res. 2013 Feb;37(2):276-83.
PMID: 22967011;
PMCID: PMC3554462
Mohammad F, Flight RM, Harrison BJ, Petruska JC, Rouchka EC. AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities. BMC Bioinformatics. 2012 Sep 12;13:229.
PMID: 23643898;
PMCID: PMC3672395
Woeste M, Steller J, Hofmann E, Kidd T, Patel R, et al. Structural requirements for inhibitory effects of bisphenols on the activity of the sarco/endoplasmic reticulum calcium ATPase. Bioorg Med Chem. 2013 Jul 1;21(13):3927-33.
PMID: 23817991;
PMCID: PMC3855891
Harrison BJ, Flight RM, Gomes C, Venkat G, Ellis SR, et al. IB4- binding sensory neurons in the adult rat express a novel 3' UTRextended isoform of CaMK4 that is associated with its localization to axons. J Comp Neurol. 2014 Feb 1;522(2):308-36.
PMID: 24035030;
PMCID: PMC3836630.
Miller J, Davis CD. Increasing frequency of feline cytauxzoonosis cases diagnosed in western Kentucky from 2001 to 2011. Vet Parasitol. 2013 Nov 15;198(1-2):205-8.
PMID: 24416530;
PMCID: PMC3886832.
Smith ME, Rajadinakaran G. The Transcriptomics to Proteomics of Hair Cell Regeneration: Looking for a Hair Cell in a Haystack. Microarrays (Basel). 2013 Jul 25;2(3)
PMID: 25237209;
PMCID: PMC4165549.
Carlson K. The Role of Only in Contrasts in and out of Context. Discourse Process. 2013;50(4):249-275.
PMID: 22444875;
PMCID: PMC3933949.
Bonfield K, Amato E, Bankemper T, Agard H, Steller J, et al. Development of a new class of aromatase inhibitors: design, synthesis and inhibitory activity of 3-phenylchroman-4-one (isoflavanone) derivatives. Bioorg Med Chem. 2012 Apr 15;20(8):2603-13.
PMID: 24345481;
PMCID: PMC3933948.
Amato E, Bankemper T, Kidney R, Do T, Onate A, et al. Investigation of fluorinated and bifunctionalized 3- phenylchroman-4-one (isoflavanone) aromatase inhibitors. Bioorg Med Chem. 2014 Jan 1;22(1):126-34.
PMID: 23750695;
PMCID: PMC4041194.
Bardgett ME, Franks-Henry JM, Colemire KR, Juneau KR, Stevens RM, et al. Adult rats treated with risperidone during development are hyperactive. Exp Clin Psychopharmacol. 2013 Jun;21(3):259- 67.
PMID: 24267470;
PMCID: PMC3907027.
Heron PM, Stromberg AJ, Breheny P, McClintock TS. Molecular events in the cell types of the olfactory epithelium during adult neurogenesis. Mol Brain. 2013 Nov 22;6:49.
PMID: 24304139;
NIHMSID: NIHMS548278; PMCID: PMC3951170.
Gonzalez OA, Novak MJ, Kirakodu S, Orraca L, Chen KC, et al. Comparative analysis of gingival tissue antigen presentation pathways in ageing and periodontitis. J Clin Periodontol. 2014 Apr;41(4):327-39.
PMID: 24361506;
PMCID: PMC3938392.
Forbes-Stovall J, Howton J, Young M, Davis G, Chandler T, et al. Chlamydomonas reinhardtii strain CC-124 is highly sensitive to blue light in addition to green and red light in resetting its circadian clock, with the blue-light photoreceptor plant cryptochrome likely acting as negative modulator. Plant Physiol Biochem. 2014 Feb;75:14-23.
PMID: 24747970;
PMCID: PMC4205225.
Shah PP, Lockwood WW, Saurabh K, Kurlawala Z, Shannon SP, et al. Ubiquilin1 represses migration and epithelial-tomesenchymal transition of human non-small cell lung cancer cells. Oncogene. 2014 Apr 21; [Epub ahead of print]
PMID: 23946390;
PMCID: PMC3742922.
Malik M, Simpson JF, Parikh I, Wilfred BR, Fardo DW, et al. CD33 Alzheimer's risk-altering polymorphism, CD33 expression, and exon 2 splicing. J Neurosci. 2013 Aug 14;33(33):13320-5.
PMID: 24049153;
PMCID: PMC3865814.
Downer B, Zanjani F, Fardo DW. The relationship between midlife and late life alcohol consumption, APOE e4 and the decline in learning and memory among older adults. Alcohol Alcohol. 2014 Jan-Feb;49(1):17-22.
PMID: 24098305;
PMCID: PMC3784826.
Estus JL, Fardo DW. Combining genetic association study designs: a GWAS case study. Front Genet. 2013;4:186.
PMID: 24141082;
PMCID: PMC3863933.
Vasquez JB, Fardo DW, Estus S. ABCA7 expression is associated with Alzheimer's disease polymorphism and disease status. Neurosci Lett. 2013 Nov 27;556:58-62.
PMID: 24729648;
PMCID: PMC3979625.
Frazier L, Clifton C Jr, Carlson K, Harris JA. Standing alone with prosodic help. Lang Cogn Process. 2014 Jan 1;29(4):459-469.
PMID: 25293549;
PMCID: PMC4190582.
Marczinski CA, Fillmore MT. Energy drinks mixed with alcohol: what are the risks?. Nutr Rev. 2014 Oct;72 Suppl 1:98-107.
PMID: 25077036;
PMCID: PMC4112473.
Fardo DW, Charnigo R, Epstein MP. Families or Unrelated: The Evolving Debate in Genetic Association Studies. J Biom Biostat. 2012 Jun 1;3(4):e108.
PMID: 23216417;
PMCID: PMC3610858.
Marczinski CA, Stamates AL. Artificial sweeteners versus regular mixers increase breath alcohol concentrations in male and female social drinkers. Alcohol Clin Exp Res. 2013 Apr;37(4):696-702.
PMID: 23384094;
PMCID: PMC3618529.
Marczinski CA, Fillmore MT. Letter to the editor in response to "The alcohol mixed with energy drinks debate: masking the facts!". Alcohol Clin Exp Res. 2013 Apr;37(4):706-8.
NIHMSID: NIHMS650555A tale of two haplotype groups: Evaluating the New World Junonia ring species hypothesis using the distribution of divergent COI haplotypes. Systematic entomology.
NIHMSID: NIHMS666695Regulation of a serine protease homolog by the JNK pathway during thoracic development of Drosophila melanogaster. FEBS open bio.
PMID: 25632406;
PMCID: PMC4306332.
Eteleeb AM, Flight RM, Harrison BJ, Petruska JC, Rouchka EC. An Island-Based Approach for Differential Expression Analysis. ACM Conf Bioinform Comput Biol Biomed Inform (2013). 2013 Dec 31;2013:419-429.
PMID: 25054080;
PMCID: PMC4103199.
Marczinski CA, Stamates AL, Ossege J, Maloney SF, Bardgett ME, et al. Subjective State, Blood Pressure, and Behavioral Control Changes Produced by an "Energy Shot". J Caffeine Res. 2014 Jun 1;4(2):57-63.
PMID: 20421741;
NIHMSID: NIHMS266818; PMCID: PMC3040646.
Wang WX, Wilfred BR, Xie K, Jennings MH, Hu YH, et al. Individual microRNAs (miRNAs) display distinct mRNA targeting "rules". RNA Biol. 2010 May-Jun;7(3):373-80.
A comparison of combined p-value methods for gene differential expression using RNA-seq data. Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics.