Recent Publications

Peer-reviewed publications and book/chapters
Journals Reference
PMID: 26515323Smith ME, Monroe JD. Causes and Consequences of Sensory Hair Cell Damage and Recovery in Fishes. Adv Exp Med Biol. 2016;877:393-417.
PMID: 26611069Smith ME. Relationship Between Hair Cell Loss and Hearing Loss in Fishes. Adv Exp Med Biol. 2016;875:1067-74. .
PMID: 26460164; PMCID: PMC4738069. Bowling BV, Schultheis PJ, Strome ED. Implementation and assessment of a yeast orphan gene research project: involving undergraduates in authentic research experiences and progressing our understanding of uncharacterized open reading frames. Yeast. 2016 Feb;33(2):43-53.
PMID: 26806035; PMCID: PMC4755797.Ashley NT, Sams DW, Brown AC, Dumaine JE. Novel environment influences the effect of paradoxical sleep deprivation upon brain and peripheral cytokine gene expression. Neurosci Lett. 2016 Feb 26;615:55-9.
PMID: 25593148; PMCID: PMC4288285. Marczinski CA. Can energy drinks increase the desire for more alcohol?. Adv Nutr. 2015 Jan;6(1):96-101.
PMID: 26425438; PMCID: PMC4564369. Srivastava A. A novel link between FMR gene and the JNK pathway provides clues to possible role in malignant pleural mesothelioma. FEBS Open Bio. 2015;5:705-11.
PMID: 25600116; PMCID: PMC4364877. Gao M, Thomson TC, Creed TM, Tu S, Loganathan SN, Jackson CA, McCluskey P, Lin Y, Collier SE, Weng Z, Lasko P, Ohi MD, Arkov AL. Glycolytic enzymes localize to ribonucleoprotein granules in Drosophila germ cells, bind Tudor and protect from transposable elements. EMBO Rep. 2015 Mar;16(3):379-86.
PMID: 25902940; PMCID: PMC4424502.Andreeva K, Soliman MM, Cooper NG. Regulatory networks in retinal ischemiareperfusion injury. BMC Genet. 2015 Apr 24;16:43.
PMID: 25670728; PMCID: PMC4421792. Maples JM, Brault JJ, Shewchuk BM, Witczak CA, Zou K, Rowland N, Hubal MJ, Weber TM, Houmard JA. Lipid exposure elicits differential responses in gene expression and DNA methylation in primary human skeletal muscle cells from severely obese women. Physiol Genomics. 2015 May;47(5):139-46.
PMID: 25969923; PMCID: PMC4737503.Noh S, Ha DT, Yang H, Kim MS. Sensitive and direct electrochemical detection of double-stranded DNA utilizing alkaline phosphatase-labelled zinc finger proteins. Analyst. 2015 Jun 21;140(12):3947-52.
PMID: 26316671; PMCID: PMC4547475.Gordon EA, Corbitt C. Investigation of pre-pubertal sex differences in wheel running and social behavior in three mouse strains. J Ethol. 2015 Aug;33(3):177-187.
PMID: 26085004; PMCID: PMC4744152. Harris JA, Carlson K. Keep it local (and final): Remnant preferences in "let alone" ellipsis. Q J Exp Psychol (Hove). 2015 Aug 5;
PMID: 26058865; PMCID: PMC4537922. Maples JM, Brault JJ, Witczak CA, Park S, Hubal MJ, Weber TM, Houmard JA, Shewchuk BM. Differential epigenetic and transcriptional response of the skeletal muscle carnitine palmitoyltransferase 1B (CPT1B) gene to lipid exposure with obesity. Am J Physiol Endocrinol Metab. 2015 Aug 15;309(4):E345-56.
PMID: 25953511; PMCID: PMC4561188. Bamji SF, Page RB, Patel D, Sanders A, Alvarez AR, Gambrell C, Naik K, Raghavan AM, Burow ME, Boue SM, Klinge CM, Ivanova M, Corbitt C. Soy glyceollins regulate transcript abundance in the female mouse brain. Funct Integr Genomics. 2015 Sep;15(5):549-61.
PMID: 26341534; PMCID: PMC4594171.Dong Q, Brenneman B, Fields C, Srivastava A. A Cathepsin-L is required for invasive behavior during Air Sac Primordium development in Drosophila melanogaster. FEBS Lett. 2015 Oct 7;589(20 Pt B):3090-7.
PMID: 26878068; PMCID: PMC4746719. Kelley RR, Wiemken TL, Chariker JH, Peyrani P, Guinn BE, Binford LE, Buckner K, Ramirez J. Real-Time Enrollment Dashboard For Multisite Clinical Trials. Contemp Clin Trials Commun. 2015 Oct 30;1:17-21.
PMID: 26507176; PMCID: PMC4663181. Stamates AL, Maloney SF, Marczinski CA. Effects of artificial sweeteners on breath alcohol concentrations in male and female social drinkers. Drug Alcohol Depend. 2015 Dec 1;157:197-9.
NIHMSID: 672901.3D Modeling of Branching Structures for Anatomical Instruction. 1045-926X.
NIHMSID: 158282. The Novel Distribution of Phosphodiesterase-4 Subtypes within the Rat Retina. Neuroscience.
NIHMSID: 275500.Individual microRNAs (miRNAs) display distinct mRNA targeting "rules". RNA biology.
PMID: 25876653 PMCID: PMC4469927 Dumaine JE, Ashley NT. Acute sleep fragmentation induces tissue-specific changes in cytokine gene expression and increases serum corticosterone concentration. Am J Physiol Regul Integr Comp Physiol. 2015 Jun 15:308(12):R1062-9
PMID: 26439490PMCID: PMC4595289 Muñoz JF, Gauthier GM, Desjardins CA, Gallo JE, Holder J, Sullivan TD, Marty AJ, Carmen JC, Chen Z, Ding L, Gujja S, Magrini V, Misas E, Mitreva M, Priest M, Saif S, Whiston EA, Young S, Zeng Q, Goldman WE, Mardis ER, Taylor JW, McEwen JG, Clay OK, Klein BS, Cuomo CA. The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia. PLoS Genet. 2015 Oct;11(10):e1005493
PMID: 26583908
PMCID: PMC4685594
Schulte PA, Whittaker C, Curran CP. Considerations for Using Genetic and Epigenetic Information in Occupational Health Risk Assessment and Standard Setting. J Occup Environ Hyg. 2015;12 Suppl 1:S69-81
PMID: 26310293
PMCID: PMC4643400
Guy MP, Shaw M, Weiner CL, Hobson L, Stark Z, Rose K, Kalscheuer VM, Gecz J, Phizicky EM. Defects in tRNA Anticodon Loop 2'-O-Methylation Are Implicated in Nonsyndromic X-Linked Intellectual Disability due to Mutations in FTSJ1. Hum Mutat. 2015 Dec;36(12):1176-87.
PMID: 25040590
PMCID: PMC4107304
Marczinski CA. Combined alcohol and energy drink use: hedonistic motives, adenosine, and alcohol dependence. Alcohol Clin Exp Res. 2014 Jul;38(7):1822-5
PMID: 25600754
PMCID: PMC4357390
Gannon MA, Brown CJ, Stevens RM, Griffith MS, Marczinski CA, Bardgett ME. Early-life risperidone administration alters maternal offspring interactions and juvenile play fighting. Pharmacol Biochem Behav. 2015 Mar:130:90-6.
PMID: 26697387
PMCID: PMC4664766
Benjamin J. Harrison, Gayathri Venkat, Thomas Hutson, Kristofer K. Rau, Mary Bartlett Bunge, Lorne M. Mendell, Fred H. Gage, Richard D. Johnson, Caitlin Hill, Eric C. Rouchka, Lawrence Moon, Jeffrey C. Petruska. Transcriptional changes in sensory ganglia associated with primary afferent axon collateral sprouting in spared dermatome model. Genom Data. 2015 Dec;6:24952
PMID: 25879800
PMCID: PMC4371809
Caitlyn Riedmann, Ye Ma, Manana Melikishvili, Steven Grason Godfrey, Zhou Zhang, Kuey Chu Chen, Eric C Rouchka, Yvonne N Fondufe-Mittendorf. Inorganic Arsenicinduced cellular transformation is coupled with genome wide changes in chromatin structure, transcriptome and splicing patterns. BMC Genomics. 2015 Mar 19;16:212
PMID: 25156440
PMCID: PMC4276498
Rankin SA, Thi Tran H, Wlizla M, Mancini P, Shifley ET, et al. A Molecular atlas of Xenopus respiratory system development. Dev Dyn. 2015 Jan;244(1):6985
PMID: 25954154
PMCID: PMC4404912
Monroe JD, Rajadinakaran G, Smith ME. Sensory hair cell death and regeneration in fishes. Front Cell Neurosci. 2015;9:131.
PMID: 24975876
PMCID: PMC4151164
Ebersole JL, Kirakodu S, Novak MJ, Stromberg AJ, Shen S, et al. Cytokine gene expression profiles during initiation, progression and resolution of periodontitis. Journal of clinical periodontology. 2014; 41(9):853-61.
PMID: 24692514
PMCID: PMC4025512
Fischl AM, Heron PM, Stromberg AJ, McClintock TS. Activity-dependent genes in mouse olfactory sensory neurons. Chemical senses. 2014; 39(5):439-49
PMID: 24560668
PMCID: PMC4037376
Premi Haynes, Kristofer E. Nava, Benjamin A. Lawson, Charles S. Chung, Mihail I. Mitov, Stuart G. Campbell, Arnold J. Stromberg, Sakthivel Sadayappan, Mark R. Bonnell, Charles W. Hoopes, Kenneth S. Campbell. Transmural heterogeneity of cellular level power output is reduced in human heart failure. Journal of molecular and cellular cardiology. J Mol Cell Cardiol. 2015 July; 72: 1–8
PMID: 24747970
PMCID: PMC4205225
Parag P. Shah, William W. Lockwood, Kumar Saurabh, Zimple Kurlawala, Sean P. Shannon, Sabine Waigel, Wolfgang Zacharias, Levi J. Beverly. Ubiquilin1 represses migration and epithelial-to-mesenchymal transition of human non-small cell lung cancer cells. Oncogene. 2015 March 26; 34(13): 1709–1717
PMID: 26371754
PMCID: PMC4570771
Michael T. Scherzer, Sabine Waigel, Howard Donninger, Vennila Arumugam, Wolfgang Zacharias, Geoffrey Clark, Leah J. Siskind, Patricia Soucy, Levi Beverly. Fibroblast- Derived Extracellular Matrices: An Alternative Cell Culture System That Increases Metastatic Cellular Properties PLoS One. 2015; 10(9): e0138065
 Andreeva K, Cooper NG. Circular RNAs: New Players in Gene Regulation. Advances in Bioscience and Biotechnology Vol. 6 No. 6, Jun 2015. (Special Issue on Noncoding DNA and RNA)
 Alexander C. Cambon, Kathy B. Baumgartner, Guy N. Brock, Nigel G. F. Cooper, Dongfeng Wu, Shesh N. Rai. Classification of Clinical Outcomes Using High-throughput Informatics: Part 1-Nonparametric Method Reviews. Model Assisted Statistics and Applications, vol 10, no. 1, pp-3-23, 2015.
 Alexander C. Cambon, Kathy B. Baumgartner, Guy N. Brock, Nigel G. F. Cooper, Dongfeng Wu, Shesh N. Rai. Classification of Clinical Outcomes Using High-throughput Informatics: Part 2-Nonparametric Method Reviews. Model Assisted Statistics and Applications, vol 10, no. 2, pp-89-107, 2015.
PMID: 26648232 Brausch AM, Holaday TC. Suicide-Related Concerns as a Mediator Between Physical Abuse and Self-Harm Behaviors in College Students. Crisis. 2015 Nov;36(6):440-6.
PMID: 26055060Cottingham C, Ferryman CJ, Wang Q. α2 Adrenergic Receptor Trafficking as a Therapeutic Target in Antidepressant Drug Action. Prog Mol Biol Transl Sci. 2015;132:207-25. doi: 10.1016/bs.pmbts.2015.03.007. Epub 2015 Apr 16. PubMed [citation]
PMID: 26485655Lester J, Chandler T, Gemene KL. Reversible Electrochemical Sensor for Detection of High-Charge Density Polyanion Contaminants in Heparin. Anal Chem. 2015 Nov 17;87(22):11537-43. doi: 10.1021/acs.analchem.5b03347. Epub 2015 Oct 28.
PMID: 26588686
PMCID: PMC4654479
Calderon LE, Liu S, Arnold N, Breakall B, Rollins J, Ndinguri M. Bromoenol lactone attenuates nicotine-induced breast cancer cell proliferation and migration. PLOS ONE 2015 Nov 20; 10(11)