Recent Publications

Peer-reviewed publications and book/chapters
Journals Reference
2017
PMID: 27837332
PMCID: PMC5226882
Yates JR, Gunkel BT, Rogers KK, Hughes MN, Prior NA. Effects of N-methyl-D-aspartate receptor ligands on sensitivity to reinforcer magnitude and delayed reinforcement in a delay-discounting procedure. Psychopharmacology. 2017 February;234(3):461-473.
PMID: 28088471
PMCID: PMC5299039
Yates JR, Rogers KK, Gunkel BT, Prior NA, Hughes MN, Sharpe SM, Campbell HL, Johnson AB, Keller MG, Breitenstein KA, Shults HN. Effects of Group I metabotropic glutamate receptor antagonists on sensitivity to reinforcer magnitude and delayed reinforcement in a delay-discounting task in rats: Contribution of delay presentation order. Behavioural brain research. 2017 March 30;322(Pt A):29-33.
 Hao, H., Xiao, D., Pan, J., Qu, J., Egger, M., Waigel, S., Sanders, M., Zacharias, W., Rai, S., and McMasters, K. (2016) MS# ASO-2016-01—164.R1: Sentinel lymph node genes to predict prognosis in node-positive melanoma patients. Annals of Surgical Oncol. 24:108-116.
PMID: 28137615
Muluhngwi P, Richardson K, Napier J, Rouchka EC, Mott JL, Klinge CM. Regulation of miR-29b-1/a transcription and identification of target mRNAs in CHO-K1 cells. Molecular and cellular endocrinology. 2017 January 28.
2016
 Calderon LE, Keeling JK, Rollins J, Black CA, Collins K, Arnold N, Vance DE, Ndinguri MW.  Pt-Mal-LHRH, a Newly Synthesized Compound Attenuating Breast Cancer Tumor Growth and Metastasis by Targeting Overexpression of the LHRH Receptor. Bioconjug Chem. 2016
PMID: 5077116Chariker JL, Miller DM, Rouchka EC. (2016) Computational analysis of G-quadruplex forming sequences across chromosomes reveals high density patterns near the terminal ends.  PLoS One 11(10): e0165101
PMID: 5001208

Rouchka EC, Chariker JH, Harrison BJ.  (2016)  Proceedings of the Fifteenth Annual UT- KBRIN Bioinformatics Summit 2016.  BMC Bioinformatics 17(Suppl 10), I1  

PMID: 5011039Radde BN, Ivanova MM, Mai HX, Alizadeh-Rad N, Piell K, Van Hoose P, Cole MP, Muluhngwi P, Kalbfleisch TS, Rouchka EC, Hill BG, Kulesza P, Klinge CM.  (2016) Nuclear respiratory factor-1 and bioenergetics in tamoxifen-resistant breast cancer cells.  Experimental Cell Research
PMID: 4995011Rezzoug F, Thomas SD, Rouchka EC, Miller DM.  (2016) Discovery of a Family of Genomic Sequences Which Interact Specifically with the c-MYC Promoter to Regulate c-MYC Expression. PLoS One 11(8):e0161588.
PMID: 4816878Rouchka EC, Jeoung M, Jang ER, Liu J, Wang C, Li X, Galperin E.  (2016) Data set for transcriptional response to depletion of the Shoc2 scaffolding protein.  Data in Brief, 7:770-778
PMID: 4829650Harrison BJ, Venkat G, Lamb J, Drury C, Hutson T, Hill C, Rouchka EC, Moon LDF, Petruska JC.  (2016) The adaptor protein CD2AP is a Coordinator of Neurotrophin Signaling-Mediated Axon Arbour Plasticity. Journal of Neuroscience 36(15):4259-4275
PMID: 4788539Jeoung M, Jang ER, Liu J, Wang C, Rouchka E, Galperin E.  (2016) Shoc-2 transduced ERK1/2 signals to cell motility – novel insights from functional genomics.  Cellular Signaling28(5):448-459
PMID: 4860959Matveeva E, Maiorano J, Zhang Q, Eteleeb AM, Convertini P, Rouchka EC, Wang J, Fondufe-Mittendorf Y. (2016) Involvement of PARP1 in the regulation of alternative splicing. Cell Discovery 2:15046. 
PMID: 4778620Rouchka EC, Flight RM, Fasciotto BH, Estrada R, Eaton JW, Patibandla PK, Waigel SJ, Li D, Kirtley JK, Sethu P, Keynton RS.  (2016) Transcriptional Profile of Immediate Response to Ionizing Radiation Exposure.  Genomics Data 7:82-85.
PMID: 4857381Soliman M, Nasraoui O, Cooper NG.  (2016) Building a glaucoma interaction network using a text mining approach.  BioData Mining 9:17
PMID: 4992590Rau KK, Hill CE, Harrison BJ, Venkat G, Koenig HM, Cook SB, Rabchevsky AG, Taylor BK, Hai T, Petruska JC.  (2016) Cutaneous tissue damage induces long-lasting nociceptive sensitization and regulation of cellular stress- and nerve injury-associated genes in sensory neurons.  Exp Neurol. 283(Pt A): 413-427. 
 Zhou R, Park JW, Chun RF, Lisse TS, Garcia AJ, Zavala K, Sea JL, Ju ZX, Xu J, Xing Y, Adams JS, Hewison M.  (2016) Concerted effects of heterogeneous nuclear ribonucleoprotein C1/C2 to control vitamin D-directed gene transcription and RNA splicing in human bone cells.  Nucleic Acids Res (Epub ahead of print)
PMID: 5096029

Bebee TW, Sims-Lucas S, Park JW, Bushnell D, Cieply B, Xing Y, Bates CM, Carstens RP.  (2016) Ablation of the epithelial-specific splicing factor Esrp1 results in ureteric branching defects and reduced nephron number.  Dev Dyn 245(10):991-1000. 

PMID: 4959312Yang Y, Park JW, Bebee TW, Warzecha CC, Guo Y, Shang X, Xing Y, Carstens RP. (2016) Determination of a Comprehensive Alternative Splicing Regulatory Network and Combinatorial Regulation by Key Factors during the Epithelial-to-Mesenchymal Transition. Mol Cell Biol. 36(11):1704-19
PMID: 4731929Lin L, Jiang P, Park JW, Wang J, Lu ZX, Lam MP, Ping P, Xing Y. (2016). The contribution of Alu exons to the human proteome. Genome Biol. 17:15.
PMID: 5179942Lin, JW Park, S Ramachandran, Y Zhang, YT Tseng, S Shen, et al. (2016) Transcriptome sequencing reveals aberrant alternative splicing in Huntington's disease. Human molecular genetics, 25(16):3454-3466.
 Calderon LE, Keeling JK, Rollins J, Black CA, Collins K, Arnold N, Vance DE, Ndinguri MW (2016) Pt-Mal-LHRH, a Newly Synthesized Compound Attenuating Breast Cancer Tumor Growth and Metastasis by Targeting Overexpression of the LHRH Receptor, Bioconjugate Chem. December 7, 2016
 Cieply B, Park JW, Nakauka-Ddamba A, Bebee TW, Guo Y, Shang X, Lengner CJ, Xing Y, Carstens RP (2016) Multiphasic and Dynamic Changes in Alternative Splicing during Induction of Pluripotency Are Coordinated by Numerous RNA-Binding Proteins. Cell Rep. 15(2):247-55
PMID: 27479110
PMCID: PMC5026934
Brausch AM, Muehlenkamp JJ, Washburn JJ. Nonsuicidal self-injury disorder: Does Criterion B add diagnostic utility?. Psychiatry research. 2016 October 30;244:179-84.
PMID: 27360800Clayton B, Wessel P, Shaker N, Zagdsuren B, Grimes B, Maples J. Accuracy of Accelerometers during High Intensity Body Weight Resistance Training: 1975 Board #127 June 2, 2: 00 PM - 3: 30 PM. Medicine and science in sports and exercise. 2016 May;48(5 Suppl 1):549.
PMID: 26896798
PMCID: PMC4797308
Ji X, Park JW, Bahrami-Samani E, Lin L, Duncan-Lewis C, Pherribo G, Xing Y, Liebhaber SA. αCP binding to a cytosine-rich subset of polypyrimidine tracts drives a novel pathway of cassette exon splicing in the mammalian transcriptome. Nucleic acids research. 2016 March 18;44(5):2283-97.
PMID: 28127406
PMCID: PMC5258119
Kim MS, Kim J. Multiplexed detection of pathogen-specific DNA using engineered zinc finger proteins without target amplification. Analytical methods : advancing methods and applications. 2016 October 7;8(37):6696-6700.
PMID: 27819431Marczinski CA, Fillmore MT, Maloney SF, Stamates AL. Faster Self-Paced Rate of Drinking for Alcohol Mixed With Energy Drinks Versus Alcohol Alone. Psychology of addictive behaviors : journal of the Society of Psychologists in Addictive Behaviors. 2016 November 7.
PMID: 27419377Marczinski CA, Fillmore MT, Stamates AL, Maloney SF. Desire to Drink Alcohol is Enhanced with High Caffeine Energy Drink Mixers. Alcoholism, clinical and experimental research. 2016 September;40(9):1982-90.
PMID: 28138317;
PMCID: PMC5271575
Marczinski CA, Hertzenberg H, Goddard P, Maloney SF, Stamates AL, O'Connor K. Alcohol-Related Facebook Activity Predicts Alcohol Use Patterns in College Students. Addiction research & theory. 2016;24(5):398-405.
PMID: 27174931
PMCID: PMC4987942
Park JW, Jung S, Rouchka EC, Tseng YT, Xing Y. rMAPS: RNA map analysis and plotting server for alternative exon regulation. Nucleic acids research. 2016 July 8;44(W1):W333-8.
PMID: 27386963
PMCID: PMC5215981
Peveler WW, Sanders G, Marczinski C, Holmer B. Effects of energy drinks on economy and cardiovascular measures. Journal of strength and conditioning research. 2016 July 5.
PMID: 27264359
PMCID: PMC4992590
Rau KK, Hill CE, Harrison BJ, Venkat G, Koenig HM, Cook SB, Rabchevsky AG, Taylor BK, Hai T, Petruska JC. Cutaneous tissue damage induces long-lasting nociceptive sensitization and regulation of cellular stress- and nerve injury-associated genes in sensory neurons. Experimental neurology. 2016 September;283(Pt A):413-27.
PMID: 27360368Zagdsuren B, Lyons ST, Maples JM, Hoover DL. Sex Differences In Relative Contribution Of Lean Mass And Fat Mass On Bone Mineral Density: 1449 Board #102 June 2, 8: 00 AM - 9: 30 AM. Medicine and science in sports and exercise. 2016 May;48(5 Suppl 1):388-9.
PMID: 27642050
PMCID: PMC5145760.
Yates JR, Breitenstein KA, Gunkel BT, Hughes MN, Johnson AB, Rogers KK, Shape SM. Effects of NMDA receptor antagonists on probability discounting depend on the order of probability presentation. Pharmacology, biochemistry, and behavior. 2016 November;150-151:31-38.
PMID: 26515323Smith ME, Monroe JD. Causes and Consequences of Sensory Hair Cell Damage and Recovery in Fishes. Adv Exp Med Biol. 2016;877:393-417.
PMID: 26611069Smith ME. Relationship Between Hair Cell Loss and Hearing Loss in Fishes. Adv Exp Med Biol. 2016;875:1067-74. .
PMID: 26460164PMCID: PMC4738069Bowling BV, Schultheis PJ, Strome ED. Implementation and assessment of a yeast orphan gene research project: involving undergraduates in authentic research experiences and progressing our understanding of uncharacterized open reading frames. Yeast. 2016 Feb;33(2):43-53.
PMID: 26806035; PMCID: PMC4755797Ashley NT, Sams DW, Brown AC, Dumaine JE. Novel environment influences the effect of paradoxical sleep deprivation upon brain and peripheral cytokine gene expression. Neurosci Lett. 2016 Feb 26;615:55-9.