2010 Publications

2010-2011

Journals  Reference SPIDs
PMID21291544 PMC Journal  Athippozhy A, Huang l, Wooton-Kee CR, Zhao T, Jungsuwadee P, Stromberg AJ,Vore M. Differential gene expression in liver and small intestine from lactating ratscompared to age-matched virgin controls detects increased mRNA of cholestero/biosynthetic genes.BMC Genomics. 2011 Feb 3; 12(1 ):95 [Epub ahead of print] 0021
PMID21073971 XPMC3034295Bardgett ME, Davis NN, Schultheis PJ, Griffith MS. Ciproxifan, an H3 receptor antagonist, alleviates hyperactivity and cognitivedeficits in the APP Tg2576 mouse model of Alzheimer's disease.Neurobiol learn Mem. 2011 Jan;95(1 ):64-72. Epub 2010 Nov 10.
Absracts Reference  
  "Analysis of equine protein-coding gene structure and expression by RNA-sequencing" Coleman S Zeng Z Liu J Macleod IN. BMC Bioinformatics 2010 11(SuppI4):08 July 2010. 0021
 Li 0 Fahim M Rouchka EC. (2010) "A Bayesian Nonparametric Model for Joint Relation Integration and Domain Clustering." To appear in Ninth International Conference on Machine Learning and Applications (ICMlA 2010) pp. 969-974. December 12-142010 Washington D.C. 0003
 Li 0 Rouchka EC Shafto P. (2010) "Phylogenomic analysis using Bayesian congruence measuring." Proceedings of the Second International Conference on Bioinformatics and Computational Biology (BICoB-201 0). pp. 30-37. March 24-262010 Honolulu HI. 0003
  Miller Ml Andringa A Schultheis PJ Shull GE. loss of the NHE2 Na+/H+ Exchanger Results in Dilation of Folliculo-Stellate Cell Canaliculi. J. of Biomedicine and Biotechnology 2011 Article 10 510827 doi: 1 0.1155/2011/51 0827 0055
 Rouchka EC Flight RM Rinehart C. (2010) "Proceedings of the Ninth Annual UT-ORNl-KBRIN Bioinformatics Summit 2010." BMC Bioinformatics 11 (Suppl 4 0003
 Smith M.E. Sun H. Schuck J.B. and Moriyama Shunsuke. 2010. Growth hormone induces proliferation in the zebrafish inner ear. BMC Bioinformatics 11(Suppl. 4):P26. Doi:10.1186/1471-2105-11-S4-P26. 0065
 Sun H. Schuck J.B. and Smith M.E. 2010. The role of growth hormone in zebrafish (D~mio rerio) auditory hair cell regeneration. Assoc. Res. Otolaryngol. Abs. 33:209.0065
  te 1M Moore l Osborne S Turner D Miller C Stephens J Reynolds K White W. project on brain and drug abuse in eastern Kentucky. Program No. 27.7. 2010 Neuroscience Meeting Planner. San Diego CA: Society for Neuroscience 2010. Online 0088
Books  Reference 
 Rice N.A. (2010) The Wolfman: A Mendelian Monster? The Chromosomal Basis of Heredity National Center for Case Study Teaching in Science. http://www.sciencecases.org/hypertrichosis/prelude.asp 0051
Journals Reference 
PMID21291544 PMC Journal Athippozhy A, Huang l, Wooton-Kee CR, Zhao T, Jungsuwadee P, Stromberg AJ,Vore M. Differential gene expression in liver and small intestine from lactating ratscompared to age-matched virgin controls detects increased mRNA of cholestero/biosynthetic genes.BMC Genomics. 2011 Feb 3; 12(1 ):95 [Epub ahead of print] 0021
PMID21073971 XPMC3034295 Bardgett ME, Davis NN, Schultheis PJ, Griffith MS. Ciproxifan, an H3 receptor antagonist, alleviates hyperactivity and cognitivedeficits in the APP Tg2576 mouse model of Alzheimer's disease.Neurobiol learn Mem. 2011 Jan;95(1 ):64-72. Epub 2010 Nov 10. 0042
PMID20621107 PMC2946466Bardgett ME, Points M, Kleier J, Blankenship M, Griffith MS. The H3 antagonist, ciproxifan, alleviates the memory impairment but enhancesthe motor effects of MK-801 (dizocilpine) in rats. 0042
PMID21164019 PMC Journal Cejka D, Herberth J, Branscum AJ, Fardo DW, Monier-Faugere MC, Diarra D,Haas M, Malluche HH. Sclerostin and Dickkopf-1 in Renal
Osteodystrophy.Clin J Am Soc Nephrol. 2010 Dec 16; [Epub ahead of print]
0021
PMID20961953 PMC3003831 Curran CP, Vorhees CV, Williams MT, Genter MB, Miller ML, Nebert DW. In utero and lactational exposure to a complex mixture of
polychlorinatedbiphenyls: toxicity in pups dependent on the Cyp1a2 and Ahr genotypes.Toxicol Sci. 2011 Jan;119(1):189-208. Epub 2010 Oct 20.
0081
PMID20487514 PMC2873830Davis RT, Ernst C, Wu D. Protein structure determination via an efficient geometric build-up algorithm.BMC Struct Biol. 2010 May 17;10 Suppl 1:S7. 0064
PMID20233650 PMC2885517 Fu WJ, Stromberg AJ, Viele K, Carroll RJ, Wu G. Statistics and
bioinformatics in nutritional sciences: analysis of complex datain the era of systems biology.J Nutr Biochem. 2010 Jul;21(7):561-72. Epub 2010 Mar
16. Review.
0021
PMID20116270 PMC2843796Gaskill C, Forbes-Stovall J, Kessler B, Young M, Rinehart CA,
Jacobshagen S. Improved automated monitoring and new analysis
algorithm for circadianphototaxis rhythms in Chlamydomonas.Plant Physiol Biochem. 2010 Apr;48(4):239-46. Epub 2010 Jan 21.
0067
PMID20303385
PMC2864803
Gearheart CM, Arazi B, Rouchka EC. DNA-based random number
generation in security circuitry.Biosystems. 2010 Jun;100(3):208-14. Epub 2010 Mar 18.
0003
PMID20433741
PMC2876147
 Heaton MP, Leymaster KA, Kalbfleisch TS, Freking BA, Smith TP, Clawson 0003, ML,Laegreid WW. Ovine reference materials and assays for prion genetic testing.BMC Vet Res. 2010 Apr 30;6:23.0091
PMID20576625 PMC2916723Hu Y, Wang K, He X, Chiang DY, Prins JF, Liu J. A probabilistic framework for aligning paired-end RNA-seq data.Bioinformatics. 2010 Aug 15;26(16):1950-7. Epub 2010 Jun 23. 0021
PMID20712718
PMC2933792
Kim S, Lamkin S, Duncan P. Caption-based topical descriptors for 0021
microscopic images as published inacademic papers.Health Info Libr J.
2010 Sep;27(3):235-43.
 
PMID20167416
PMC2885586
 Lape M, Elam C, Paula S. Comparison of current docking tools for the
simulation of inhibitor binding bythe transmembrane domain of the
sarco/endoplasmic reticulum calcium ATPase.Biophys Chem. 2010
Aug;150(1-3):88-97. Epub 2010 Feb 4.
0066
PMID20185210
PMC2857564
 Lape M, Paula S, Ball WJ Jr. A molecular model for cocaine binding by the immunotherapeutic human/mousechimeric monoclonal antibody 2E2.Eur J Med Chem. 2010 Jun;45(6):2291-8. Epub 2010 Feb 6. 0066
PMID20061648
PMC2905865
Lynn BC, Wang J, Markesbery WR, Lovell MA. Quantitative changes in the mitochondrial proteome from subjects with mildcognitive impairment, early stage, and late stage Alzheimer's disease.J Alzheimers Dis. 2010;19(1):325-39.0021
PMID21044359
PMC2967742
Rouchka E, Montoya-Durango DE, Stribinskis V, Ramos K, Kalbfleisch T. 0003
Assessment of genetic variation for the LINE-1 retrotransposon from
nextgeneration sequence data.BMC Bioinformatics. 2010 Oct 28;11 Suppl
9:S12.
 
PMID20515480
PMC2901318
Rouchka EC. Database of exact tandem repeats in the Zebrafish
genome.BMC Genomics. 2010 Jun 1;11:347.
0003
PMID20802226
PMC2952873
Wang K, Singh D, Zeng Z, Coleman SJ, Huang Y, Savich GL, He X,
MieczkowskiP, Grimm SA, Perou CM, MacLeod JN, Chiang DY, Prins JF,
Liu J. MapSplice: accurate mapping of RNA-seq reads for splice junction
discovery.Nucleic Acids Res. 2010 Oct;38(18):e178. Epub 2010 Aug 27.
0021
PMID20489155
PMC2893676
 Wang WX, Wilfred BR, Madathil SK, Tang G, Hu Y, Dimayuga J,
Stromberg AJ,Huang Q, Saatman KE, Nelson PT. miR-107 regulates
granulin/progranulin with implications for traumatic braininjury and
neurodegenerative disease.Am J Pathol. 2010 Jul;177(1):334-45. Epub
2010 May 20.
0021
PMID20421741
PMC3040646
 Wang WX, Wilfred BR, Xie K, Jennings MH, Hu YH, Stromberg AJ, Nelson PT. Individual microRNAs (miRNAs) display distinct mRNA targeting "rules".RNA Biol. 2010 May-Jun;7(3):373-80. 0021
PMID20851139
PMC2957650
White W, Hundley MB, White IM. The effects of dose and repeated
administration on the longer-term hypophagiaproduced by amphetamine in rats.Pharmacol Biochem Behav. 2010 Dec;97(2):384-91. Epub 2010 Sep 17.
0088