KBRIN-funded Next Generation Sequencing Projects

Title

Researcher

Inst.

Type

Year

Variant detection of human respiratory syncytial virus

Bill Severson, Department of Microbiology

UofL

WGS/variant

2015

Comparison of SBKR-3 Single Cell vs. Cell Line SNP Detection Using AmpliSeqTM Cancer Hotspot Panel

Lori Millner, Department of Pathology and Laboratory Medicine

UofL

Cancer Hotspot

2015

Sequence and Variant Analysis of Pu27 Homologs using Amplicon Sequencing

Don Miller, Department of Medicine - Oncology

UofL

Custom Amplicon

2015

Analysis of Putative g-Quadruplex Forming Sequences Within the Mus musculus Papillomavirus

Alfred Jensen, Department of Medicine - Oncology

UofL

Bioinformatics

2015

Comparison of Methodologies for Differential Expression of a Mus musculus RNASeq Dataset Generated on the CeGeMM NextSeq-500

Alan Cheng, Department of Biochemistry and Molecular Biology

UofL

RNASeq

2015

Analysis of g-Quadruplex Forming Sequences Within the Manatee Papillomavirus

Alfred Jensen, Department of Medicine - Oncology

UofL

Bioinformatics

2015

Gut microbiota of APCmin and CCR2XAPCmin mice

Venkatakrishna Jala, Department of Microbiology

UofL

16s rRNA

2015

Pu27 Treatment Analysis Using RNA-Seq

Don Miller, Department of Medicine - Oncology

UofL

RNASeq

2015

Analysis of g-Quadruplex Forming Sequences Across 9 Rodent Papillomavirus Genomes

Joongho Joh, Department of Medicine - Oncology

UofL

Bioinformatics

2015

RNASeq Analysis of human neutrophils infected with F. alocis

Sylvia Uriatre

UofL

RNASeq

2015

Bind-N-Seq Analysis of Zink Finger Proteins

Moon-Soo Kim

WKU

Amplicon Sequencing

2015

Analysis of g-Quadruplex Forming Sequences Within Manatee Papillomavirus Strains 1,3,4

Alfred Jenson

UofL

Bioinformatics

2015

Transcriptome Study of Acinobacter baumanni ddrR Mutant vs WT cells

Janelle Hare

MSU

RNASeq

2015

Identification of host innate immune genes activated by pyrimidine depletion in cells

Donghoon Chung

UofL

RNASeq

2015

Transcriptome Assembly of Pelargonium X Hortorum

David Schultz

UofL

RNASeq

2015

RNASeq Analysis of Crystalline Sillica (CS) Promoting Lung Tumor Growth by Recruiting N2-Neutrophils

Hari Bodduluri

UofL

RNASeq

2015

Investigating the relationships between the various cellular compositions of ECTs and the tissue level activation of critical regulatory pathways relevant to myocardial function, remodeling, and angiogenesis

Fei Yi

UofL

RNASeq

2015

Immunomodulatory effects of Urolithin A on Macrophages

Venkatakrishna Jala, Department of Microbiology

UofL

RNASeq

2015

Gut microbiome analysis of colon cancer and IBD patients using an open reference

Venkatakrishna Jala

UofL

16s rRNA

2015

Pu27 Treatment Analysis Using RNA-Seq: A comparison of hg19 and hg38 using Ensembl Annotations

Don Miller, Department of Medicine - Oncology

UofL

RNASeq

2015

Identification of differentially expressed genes between two breast cancer cell lines: MDA231 and MDA231LN

Jino Park

UofL

RNASeq

2015

Hepatitis C variant detection, round II

Michael Hughes, Department of Surgery - General

UofL

Variant

2014

Ion AmpliSeqTM Comprehensive Cancer Panel Variant Detection

Donald Miller, Department of Medicine - Oncology

UofL

CCP

2014

Ion AmpliSeq TM Comprehensive Cancer Panel Variant Detection for Fanconi Anemia

Alfred Jenson, Department of Medicine - Oncology

UofL

CCP

2014

Role of PARP1 in Alternative Splicing

Yvonne Fondufe-Mittendorf, Department of Cellular and Molecular Biology

UK

RNASeq

2014

Mechanisms of soy glyceollin in brain

Cynthia Corbitt, Department of Biology

UofL

RNASeq

2014

Sex specific miRNA expression profiles in mice with left ventricular hypertrophy using pyrosequencing

Rebekah Waikel, Department of Biology

EKU

miRNA

2014

Transcriptional analysis of African green monkey cells with lentivirus treatment

Emilia Galperin, Department of Cellular and Molecular Biology

UK

RNASeq

2014

Gut microbiome analysis of colon cancer and IBD patients using a closed reference

Venkatakrishna Jala, Department of Microbiology

UofL

16s rRNA

2014

Legionella Variant Detection

Yousef Abu-Kwaik, Department of Microbiology

UofL

Variant

2013

Adenovirus Variant Detection

Sam Zhou, Department of Surgery - Oncology

UofL

Variant

2013

Hepatitis C variant detection

Michael Hughes, Department of Surgery - General

UofL

Variant

2013

Amplicon sequencing of equine encephalitis virus and SNPs detection

Donghoon Chung, Department of Microbiology

UofL

WGS/Variant

2013

De novo sequencing of Achebe bacteriophage

Claire Rinehart, Department of Biology

WKU

WGS/Variant

2013

De novo sequencing of Busterbird bacteriophage

Claire Rinehart, Department of Biology

WKU

WGS/Variant

2013

miRNA profiles of oral cancer cells after treatment with tobacco products

Wolfgang Zacharias, Department of Medicine - Oncology

UofL

miRNA

2013

Sex specific miRNA expression profiles in mice with Left Ventricular Hypertrophy

Rebekah Waikel

EKU

miRNASeq

2012

Transcriptome analysis of Acinetobacter baumannii

Janelle Hare

MoSU

RNASeq

2012

Growth Hormone Pathways in Zebrafish Auditory Hair Cell Regeneration using GH Antagonist

Michael Smith

WKU

RNASeq

2012

Using Next-generation Sequencing to Reveal the Target Genes of miR-21 and its Function in Acute Pancreatitis

Yong Li

UofL

RNASeq

2012

Exosome miRNA profiles as innovative biomarkers in melanoma patients

Hongying Hao

UofL

miRNASeq

2012

Gut microbiome analysis of colon cancer and IBD patients

Venkatakrishna Jala

UofL

16s

2012

To establish an RNA code regulated by hnRNPH in oligodendrocytes by mapping RNA protein interactions in vivo

Franca Cambi

UK

RIP-Seq

2012

The role of stress granule mRNA in adaptive stress responses of the murine kidney

Michael Merchant, Department of Medicine - Renal

UofL

RNASeq

2012

De Novo sequencing of Pseudomonas fluorescens

Hazel Barton

NKU

De-novo

2011

Sex specific miRNA expression profiles in mice with Left Ventricular Hypertrophy using pyrosequencing

Rebekah Waikel

EKU

miRNA Seq

2011

Next Generation Sequencing to Reveal Growth Hormone Pathways in Zebrafish Auditory Hair Cell Regeneration

Michael Smith

WKU

RNASeq

2011

Identification of axonal collateral sprouting-specific genes

Jeffrey Petruska

UofL

RNASeq

2011

Activity/stress increases acetylation of lysine 14 in histone H3 (H3K14ac) in olfactory sensory neurons

Timothy McClintock

UK

CHiPSeq

2011