KBRIN-funded Next Generation Sequencing Projects
Title | Researcher | Inst. | Type | Year |
|---|---|---|---|---|
Variant detection of human respiratory syncytial virus | Bill Severson, Department of Microbiology | UofL | WGS/variant | 2015 |
Comparison of SBKR-3 Single Cell vs. Cell Line SNP Detection Using AmpliSeqTM Cancer Hotspot Panel | Lori Millner, Department of Pathology and Laboratory Medicine | UofL | Cancer Hotspot | 2015 |
Sequence and Variant Analysis of Pu27 Homologs using Amplicon Sequencing | Don Miller, Department of Medicine - Oncology | UofL | Custom Amplicon | 2015 |
Analysis of Putative g-Quadruplex Forming Sequences Within the Mus musculus Papillomavirus | Alfred Jensen, Department of Medicine - Oncology | UofL | Bioinformatics | 2015 |
Comparison of Methodologies for Differential Expression of a Mus musculus RNASeq Dataset Generated on the CeGeMM NextSeq-500 | Alan Cheng, Department of Biochemistry and Molecular Biology | UofL | RNASeq | 2015 |
Analysis of g-Quadruplex Forming Sequences Within the Manatee Papillomavirus | Alfred Jensen, Department of Medicine - Oncology | UofL | Bioinformatics | 2015 |
Gut microbiota of APCmin and CCR2XAPCmin mice | Venkatakrishna Jala, Department of Microbiology | UofL | 16s rRNA | 2015 |
Pu27 Treatment Analysis Using RNA-Seq | Don Miller, Department of Medicine - Oncology | UofL | RNASeq | 2015 |
Analysis of g-Quadruplex Forming Sequences Across 9 Rodent Papillomavirus Genomes | Joongho Joh, Department of Medicine - Oncology | UofL | Bioinformatics | 2015 |
RNASeq Analysis of human neutrophils infected with F. alocis | Sylvia Uriatre | UofL | RNASeq | 2015 |
Bind-N-Seq Analysis of Zink Finger Proteins | Moon-Soo Kim | WKU | Amplicon Sequencing | 2015 |
Analysis of g-Quadruplex Forming Sequences Within Manatee Papillomavirus Strains 1,3,4 | Alfred Jenson | UofL | Bioinformatics | 2015 |
Transcriptome Study of Acinobacter baumanni ddrR Mutant vs WT cells | Janelle Hare | MSU | RNASeq | 2015 |
Identification of host innate immune genes activated by pyrimidine depletion in cells | Donghoon Chung | UofL | RNASeq | 2015 |
Transcriptome Assembly of Pelargonium X Hortorum | David Schultz | UofL | RNASeq | 2015 |
RNASeq Analysis of Crystalline Sillica (CS) Promoting Lung Tumor Growth by Recruiting N2-Neutrophils | Hari Bodduluri | UofL | RNASeq | 2015 |
Investigating the relationships between the various cellular compositions of ECTs and the tissue level activation of critical regulatory pathways relevant to myocardial function, remodeling, and angiogenesis | Fei Yi | UofL | RNASeq | 2015 |
Immunomodulatory effects of Urolithin A on Macrophages | Venkatakrishna Jala, Department of Microbiology | UofL | RNASeq | 2015 |
Gut microbiome analysis of colon cancer and IBD patients using an open reference | Venkatakrishna Jala | UofL | 16s rRNA | 2015 |
Pu27 Treatment Analysis Using RNA-Seq: A comparison of hg19 and hg38 using Ensembl Annotations | Don Miller, Department of Medicine - Oncology | UofL | RNASeq | 2015 |
Identification of differentially expressed genes between two breast cancer cell lines: MDA231 and MDA231LN | Jino Park | UofL | RNASeq | 2015 |
Hepatitis C variant detection, round II | Michael Hughes, Department of Surgery - General | UofL | Variant | 2014 |
Ion AmpliSeqTM Comprehensive Cancer Panel Variant Detection | Donald Miller, Department of Medicine - Oncology | UofL | CCP | 2014 |
Ion AmpliSeq TM Comprehensive Cancer Panel Variant Detection for Fanconi Anemia | Alfred Jenson, Department of Medicine - Oncology | UofL | CCP | 2014 |
Role of PARP1 in Alternative Splicing | Yvonne Fondufe-Mittendorf, Department of Cellular and Molecular Biology | UK | RNASeq | 2014 |
Mechanisms of soy glyceollin in brain | Cynthia Corbitt, Department of Biology | UofL | RNASeq | 2014 |
Sex specific miRNA expression profiles in mice with left ventricular hypertrophy using pyrosequencing | Rebekah Waikel, Department of Biology | EKU | miRNA | 2014 |
Transcriptional analysis of African green monkey cells with lentivirus treatment | Emilia Galperin, Department of Cellular and Molecular Biology | UK | RNASeq | 2014 |
Gut microbiome analysis of colon cancer and IBD patients using a closed reference | Venkatakrishna Jala, Department of Microbiology | UofL | 16s rRNA | 2014 |
Legionella Variant Detection | Yousef Abu-Kwaik, Department of Microbiology | UofL | Variant | 2013 |
Adenovirus Variant Detection | Sam Zhou, Department of Surgery - Oncology | UofL | Variant | 2013 |
Hepatitis C variant detection | Michael Hughes, Department of Surgery - General | UofL | Variant | 2013 |
Amplicon sequencing of equine encephalitis virus and SNPs detection | Donghoon Chung, Department of Microbiology | UofL | WGS/Variant | 2013 |
De novo sequencing of Achebe bacteriophage | Claire Rinehart, Department of Biology | WKU | WGS/Variant | 2013 |
De novo sequencing of Busterbird bacteriophage | Claire Rinehart, Department of Biology | WKU | WGS/Variant | 2013 |
miRNA profiles of oral cancer cells after treatment with tobacco products | Wolfgang Zacharias, Department of Medicine - Oncology | UofL | miRNA | 2013 |
Sex specific miRNA expression profiles in mice with Left Ventricular Hypertrophy | Rebekah Waikel | EKU | miRNASeq | 2012 |
Transcriptome analysis of Acinetobacter baumannii | Janelle Hare | MoSU | RNASeq | 2012 |
Growth Hormone Pathways in Zebrafish Auditory Hair Cell Regeneration using GH Antagonist | Michael Smith | WKU | RNASeq | 2012 |
Using Next-generation Sequencing to Reveal the Target Genes of miR-21 and its Function in Acute Pancreatitis | Yong Li | UofL | RNASeq | 2012 |
Exosome miRNA profiles as innovative biomarkers in melanoma patients | Hongying Hao | UofL | miRNASeq | 2012 |
Gut microbiome analysis of colon cancer and IBD patients | Venkatakrishna Jala | UofL | 16s | 2012 |
To establish an RNA code regulated by hnRNPH in oligodendrocytes by mapping RNA protein interactions in vivo | Franca Cambi | UK | RIP-Seq | 2012 |
The role of stress granule mRNA in adaptive stress responses of the murine kidney | Michael Merchant, Department of Medicine - Renal | UofL | RNASeq | 2012 |
De Novo sequencing of Pseudomonas fluorescens | Hazel Barton | NKU | De-novo | 2011 |
Sex specific miRNA expression profiles in mice with Left Ventricular Hypertrophy using pyrosequencing | Rebekah Waikel | EKU | miRNA Seq | 2011 |
Next Generation Sequencing to Reveal Growth Hormone Pathways in Zebrafish Auditory Hair Cell Regeneration | Michael Smith | WKU | RNASeq | 2011 |
Identification of axonal collateral sprouting-specific genes | Jeffrey Petruska | UofL | RNASeq | 2011 |
Activity/stress increases acetylation of lysine 14 in histone H3 (H3K14ac) in olfactory sensory neurons | Timothy McClintock | UK | CHiPSeq | 2011 |