Links and Literature

Links to related sites:

• INBRE
• Brown Cancer Center
• Affymetrix
• Agilent
• Gene Ontology
• KEGG (Kyoto Encyclopedia of Genes and Genomes)
• Ingenuity
• Partek
• Genespring
• MGED - Microarray Gene Expression Data Society

Related Literature:

• Affymetrix Manuals
• Search Affymetrix's scientific literature database
• Expression profiling--best practices for data generation and interpretation in clinical trials
  Hoffman, E. P., Awad, T., Palma, J., Webster, T., Hubbell, E., Warrington, J. A., Spira, A., Wright, G., Buckley, J., Triche, T., Davis, R., Tibshirani, R., Xiao, W., Jones, W., Tompkins, R. and West, M. Nature Reviews Genetics 5, 229-37, 2004
• Comparison of different isolation techniques prior gene expression profiling of blood derived cells: impact on physiological responses, on overall expression and the role of different cell types.
  Debey, S., Schoenbeck, U., Hellmich, M., Gathof, B. S., Pillai, R., Zander, T. and Schultze, J. L. Pharmacogenomics Journal 4, 193-207, 2004
• affy--analysis of Affymetrix GeneChip data at the probe level
  Gautier, L., Cope, L., Bolstad, B. M. and Irizarry, R. A. Bioinformatics 20, 307-15, 2004
• A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
  Bolstad, B. M., Irizarry, R. A., Astrand, M. and Speed, T. P. Bioinformatics 19, 185-93, 2003